4.1. jsa.seq.stats: Show statistics of sequences¶

jsa.seq.stats shows the compositional statistics of sequences in file or from standard input). It is included in the Japsa package. Please see check the installation page for instructions.

4.1.1. Synopsis¶

jsa.seq.stats: Show statistical composition of sequences)

4.1.2. Usage¶

jsa.seq.stats [options]

4.1.3. Options¶

--input=s Name of the input file, - for standard input (REQUIRED)

--alphabet=s Alphabet of the input file. Options: DNA (DNA=DNA16), DNA4 (ACGT), DNA5(ACGTN), DNA16 and Protein (default=’DNA’)

--help Display this usage and exit (default=’false’)