4.23. jsa.phylo.normalise: Normalise branch length of a phylogeny

jsa.phylo.normalise scales the branches of a phylogeny so that their sum equates to a value.

jsa.phylo.normalise is included in the Japsa package. Please see check the installation page for instructions.

4.23.1. Synopsis

jsa.phylo.normalise: Scale branches of a phylogeny so that the sum of branch lengths is equal to a value

4.23.2. Usage

jsa.phylo.normalise [options]

4.23.3. Options

--input=s Name of the input file, - for standard input (REQUIRED)
--sum=d Sum of branches after normalising (default=‘1.0’)
--scale=d Scale factor, if set to a positive number will override the sum parameter (default=‘0.0’)
--output=s Name of the file for output, - for stdout (default=’-‘)
--help Display this usage and exit (default=’false’)