4.23. jsa.phylo.normalise: Normalise branch length of a phylogeny¶
jsa.phylo.normalise scales the branches of a phylogeny so that their sum equates to a value.
jsa.phylo.normalise is included in the Japsa package. Please see check the installation page for instructions.
4.23.1. Synopsis¶
jsa.phylo.normalise: Scale branches of a phylogeny so that the sum of branch lengths is equal to a value
4.23.2. Usage¶
jsa.phylo.normalise [options]
4.23.3. Options¶
--input=s Name of the input file, - for standard input (REQUIRED) --sum=d Sum of branches after normalising (default=‘1.0’) --scale=d Scale factor, if set to a positive number will override the sum parameter (default=‘0.0’) --output=s Name of the file for output, - for stdout (default=’-‘) --help Display this usage and exit (default=’false’)