4.8. jsa.seq.emalign Align two sequences using EM

4.8.1. Synopsis

jsa.seq.emalign: Get the best alignment of 2 sequences using Expectation-Maximisation on Finite State Machine

4.8.2. Usage

jsa.seq.emalign [options] seq1 seq2

4.8.3. Options

--iteration=i	Number of iteration (default=‘5’)
--help	Display this usage and exit (default=’false’)